APMA Junior Board

Representing and supporting young scientists in Proteomics, Lipidomics, Metabolomics and Bioinformatics.

Publications

We proudly present publications from fellow APMA members and scientists in the fields of Proteomics, Lipidomics, Metabolomics and Bioinformatics:

Automated Liquid Handling Extraction and Rapid Quantification of Underivatized Amino Acids and Tryptophan Metabolites from Human Serum and Plasma Using Dual-Column U(H)PLC-MRM-MS and Its Application to Prostate Cancer Study

by Tobias Kipura, Madlen Hotze, Alexa Hofer, Anna-Sophia Egger, Lea E. Timpen, Christiane A. Opitz, Paul A. Townsend, Lee A. Gethings, Kathrin Thedieck and Marcel Kwiatkowski, 2024.

MobiLipid: A Tool for Enhancing CCS Quality Control of Ion Mobility–Mass Spectrometry Lipidomics by Internal Standardization

by Felina Hildebrand, Gunda Koellensperger and Tim Causon, 2024.

MS2Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0

by Louise M. Buur, Arthur Declercq, Marina Strobl, Robbin Bouwmeester, Sven Degroeve, Lennart Martens, Viktoria Dorfer and Ralf Gabriels, 2024.

Micropillar arrays, wide window acquisition and AI-based data analysis improve comprehensiveness in multiple proteomic applications

by Manuel Matzinger, Anna Schmücker, Ramesh Yelagandula, Karel Stejskal, Gabriela Krššáková, Frédéric Berger, Karl Mechtler and Rupert L. Mayer, 2024.

Immunopeptidomics in the Era of Single-Cell Proteomics

by Rupert L. Mayer and Karl Mechtler, 2023.

MS Annika 2.0 Identifies Cross-Linked Peptides in MS2–MS3-Based Workflows at High Sensitivity and Specificity

by Micha J. Birklbauer, Manuel Matzinger, Fränze Müller, Karl Mechtler and Viktoria Dorfer, 2023.

Scrutinizing different ionization responses of polar lipids in a reversed-phase gradient by implementing a counter-gradient

by Felina Hildebrand, Harald Schoeny, Evelyn Rampler and Gunda Koellensperger, 2023.

Proteome Coverage after Simultaneous Proteo-Metabolome Liquid–Liquid Extraction

by Alienke van Pijkeren, Anna-Sophia Egger, Madlen Hotze, Elisabeth Zimmermann, Tobias Kipura, Julia Grander, André Gollowitzer, Andreas Koeberle, Rainer Bischoff, Kathrin Thedieck and Marcel Kwiatkowski, 2023.

MS-RIDD paves the way toward routine double bond localization in mass spectrometry-based lipidomics

by Leonida M. Lamp and Jürgen Hartler, 2022.

Decoding Distinct Ganglioside Patterns of Native and Differentiated Mesenchymal Stem Cells by a Novel Glycolipidomics Profiling Strategy

by Katharina Hohenwallner, Nina Troppmair, Lisa Panzenboeck, Cornelia Kasper, Yasin El Abiead, Gunda Koellensperger, Leonida M. Lamp, Jürgen Hartler, Dominik Egger and Evelyn Rampler, 2022.

Combined Metabolic and Chemical (CoMetChem) Labeling Using Stable Isotopes—a Strategy to Reveal Site-Specific Histone Acetylation and Deacetylation Rates by LC–MS

by Alienke van Pijkeren, Jörn Dietze, Alejandro Sánchez Brotons, Anna-Sophia Egger, Tim Lijster, Andrei Barcaru, Madlen Hotze, Philipp Kobler, Frank J. Dekker, Peter Horvatovich, Barbro N. Melgert, Mathias Ziegler, Kathrin Thedieck, Ines Heiland, Rainer Bischoff and Marcel Kwiatkowski, 2021.

Uptake and bio-transformation of telmisartan by cress (Lepidium sativum) from sewage treatment plant effluents using high-performance liquid chromatography/drift-tube ion-mobility quadrupole time-of-flight mass spectrometry

by Tamara Lang, Markus Himmelsbach, Franz Mlynek, Wolfgang Buchberger and Christian W. Klampfl, 2021.